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■ 논문
1. Won J-I, Shin JM, Park SY, Yoon JH, Jeong D-H. (2020) Global Analysis of the Human RNA Degradome Reveals Widespread Decapped and Endonucleolytic Cleaved Transcripts. Int. J. Mol. Sci. 21: 6452
2. Park SY, Choi JH, Oh DH, Johnson JC, Dassanayake M, Jeong D-H, Oh MH. (2020) Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes Genomics. 42: 957-969.
3. Won J-I, Lee JB, Lee HW, Shin JM, Yoon JH, Jeong D-H. (2019) WebPORD: a web-based pipeline of RNA degradome. Int, J. Data Mining and Bioinformatics. 22: 216-230
4. Franke KR, Schmidt SA, Park S, Jeong D-H, Accerbi M, Green PJ. (2018) Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops. BMC Genomics. 19: 547
5. Chung PJ, Jung H, Jeong D-H, Ha SH, Choi YD, Kim JK. (2016) Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice. BMC Genomics. 17: 56
6. Jeong D-H (2016) Functional diversity of microRNA variants in plants J. Plant Biol. 59: 303-310
7. Kim C-Y, Vo KTX, Nguyen CD, Jeong D-H, Lee S-K, Kumar M, Kim S-R, Park S-H, Kim J-K, Jeon J-S. (2016) Functional analysis of a cold-responsive rice WRKY gene, OsWRKY71. Plant Biotechnology Reports. 10:13-23
8. Schmidt SA, Foley PL, Jeong D-H, Rymarquis LA, Doyle F, Tenenbaum SA, Belasco JG,, and Green PJ. (2015) Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells. Nucleic Acids Res. 43: 309-323
9. Jeong D-H, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, De Paoli E, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, and Green PJ. (2013) Parallel analysis of RNA ends enhances global investigation of miRNAs and target RNAs of Brachypodium distachyon. Genome Biology 14:R145
10. Jeong D-H, and Green PJ. (2013) The role of rice microRNAs in abiotic stress responses. J. Plant Biol. 56: 187-197 (review)
11. Jeong D-H*, Thatcher SR*, Brown RSH, Zhai J, Park S, Rymarquis LA, Meyers BC, and Green PJ. (2013) Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading and target cleavage. Plant Physiol. 162:1225-1245 (*co-first authors)
12. Jeong D-H, and Green PJ. (2012) Methods for validation of miRNA sequence variants and the cleavage of their targets. Methods 58:135-143
13. Song X, Li P, Zhai J, Zhou M, Liu B, Ma L, Jeong D-H, Nakata M, Cao S, Liu C, Chu C, Wang X-J, Green PJ, Meyers BC, and Cao X.(2012) Role of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J. 69:462-474
14. Jeong D-H, Park S, Zhai J, Gurazada SGR, De Paoli E, Meyers BC, and Green PJ. (2011) Massive analysis of rice small RNAs: Mechanistic implication of regulated miRNAs and variants for differential target RNA cleavage. Plant Cell 23: 4185-4207
15. Zhai J, Jeong D-H, De Paoli E,Park S,Rosen BD, Li Y, González AJ,Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC. (2011) microRNAs as Master Regulators of the Plant NB-LRR Defense Gene Family via the Production of Phased, Trans-acting siRNAs. Genes and Development 25:1540
16. Young ND, Debellé F, Oldroyd G, Geurts R, Cannon SB, Mayer KFX, Gouzy J, Van de Peer Y, Schoof H, Udvardi MK, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Proost S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Benedito VA, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Doyle JJ, Dudez A-M, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray S, Jeong D-H, Jing Y, Jöcker A, Kenton SM, Kim D-J, Kathrin Klee, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun J-H, Najar FZ, Nicholson C, Noirot C, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Saurat O, Scarpelli C, Schiex T, Segurens B, Seigfried M, Severin A, Sherrier DJ, Shi R, Sims S, Sinharoy S, Sterck L, Vasylenko I, Viollet A, Wang K, Wang B-B, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA. (2011) The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses. Nature 480:520-524
17. Lee Y-S, Jeong D-H, Lee D-Y, Yi J, Ryu C-H, Kim SL, Jeong HJ, Choi SC, Jin P, Yang J, Choi L-H, Choi H, and An G (2010) OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB. Plant J. 63:1830.
18. Joshi T, Yan Z, Libault M, Jeong D-H, Park S, Green PJ, Sherrier Dj, Farmer A, May G, Meyers BC, Xu D, Stacey G (2010) Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics 11 (Suppl 1):S14.
19. De Paoli E, Dorantes A, Zhai J, Accerbi M, Jeong D-H, Park S, Meyers BC, Jorgensen RA, Green PJ (2009). Distinct extremely abundant siRNAs associated with cosuppression in petunia. RNA 15:1965-1970.
20. Haas BJ, Kamoun S, Zody MC, Jiang RHY, HandsakerRE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AMV, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JIB, Broad Institute Genome Sequencing Platform, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R,Fahlgren N,Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu C-H, Huitema E, Jeong D-H, Jones AME, Jones JDJ, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma LJ, MacLean D, Marcus C, McDonald H, McWalters J, Meijer HJG, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJI, Vipaporn P, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PRJ, Whisson SC, Judelson HS, Nusbaum C (2009). Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461:393-398.
21. Moon S, Giglione C, Lee D-Y, An S, Jeong D-H, Meinnel T, An G (2008) Rice peptide deformylase PDF1B is crucial for development of chloroplasts. Plant and Cell Physiology 49: 1535-1546.
22. Nobuta K, Lu C, Shrivastava R, Pillay M, De Paoli E, Accerbi M, Arteaga-Vasquez M, Sidorenko L, Jeong D-H, Yen Y, Chandler V, Green PJ, Meyers BC (2008) A novel size distribution of endogenous siRNAs in maize: evidence from sequencing in the mop1-1 mutant. P.N.A.S. 105:14958-14963.
23. German MA, Pillay M, Jeong D-H, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ (2008) Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat. Biotechnol. 26:941-946.
24. Lee S, Jeong D-H, An G (2008) A possible working mechanism for rice SVP group MADS-box proteins as negative regulators of brassinosteroid responses. Plant signaling & behavior 3: 471-474.
25. Lu C, Jeong D-H, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ (2008) Genome-wide analysis for discovery of unique rice miRNAs reveals natural antisense miRNAs (nat-miRNAs). P.N.A.S. 105:4951-4956.
26. Jeong D-H, Lee S, Kim SL, Hwang I, An G, (2007) Regulation of brassinosteroid responses by phytochrome B in rice. Plant Cell Environ. 30: 590-599.
27. Jeong D-H*, An S*, Park S, Kang H-G, Park G-G, Kim S-R, Sim J, Kim Y-O, Kim M-K, Kim S-R, Kim J, Shin M, Jung M, An G. (2006) Generation of flanking sequence tag database for activation tagging lines in japonica rice, Plant J. 45:123-132. (*co-first authors)
28. Kim SJ, Jeong DH, An G, Kim S-R (2005) Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice, J. Plant Biol. 48:371-379.
29. Shin J-H, Jeong D-H, Park MC, An G. (2005) Characterization and transcriptional expression of the α-expansin gene family in rice, Mol. Cells, 20:210-218.
30. An G, Jeong D-H, Jung K-H, Lee S. (2005) Reverse genetic approaches for functional genomics of rice. Plant Mol. Biol. 59:111-123. (review)
31. Lee S-C, Kim J-Y, Kim S-H, Kim S-J, Lee K, Han S-K, Choi H-S, Jeong D-H, An G, Kim S-R, (2004) Trapping and characterization of cold-responsive genes from T-DNA tagging lines in rice, Plant Science,166: 69-79.
32. Lee S, Kim J, Son J-S, Nam J, Jeong D-H, Lee K, Jang S, Yoo J, Lee J, Lee D-Y, Kang H-G, An G, (2003) Systematic reverse genetic screening of T-DNA tagged genes in rice for functional genomic analyses: MADS-box genes as a test case. Plant Cell Physiol, 44: 1403-1411.
33. An S, Park S, Jeong D-H, Lee D-Y, Kang H-G, Yu J-H, Hur J, Kim S-R, Kim Y-H, Lee M, Han S, Kim S-J, Yang J, Kim E, Wi SJ, Chung HS, Hong J-P, Choe V, Lee H-K, Choi J-H, Nam J, Kim S-R, Park P-B, Park KY, Kim WT, Choe S, Lee C-B, An G. (2003) Generation and analysis of end-sequence database for T-DNA tagging lines in rice. Plant Physiol 133: 2040-2047.
34. Sasaki A, Itoh H, Gomi K, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Jeong D-H, An G, Kitano H, Ashikari M, Matsuoka M. (2003) Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Science 299: 1896-1898.
35. Jeong D-H, An S, Kang H-G, Moon S, Han J-J, Park S, Lee H S, An K, An G. (2002) T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol. 130:1636-1644.
36. Yang K, Jeong D-H, Jang S, An G. (2001) Molecular cloning and characterization of a rice PP2C, OsPP2C4. J. Plant Biol. 44: 1-6.
37. Sung S-K, Yu G-H, Nam J, Jeong D-H, An G. (2000) Developmentally regulated expression of two MADS-box genes, MdMADS3 and MdMADS4, in the morphogenesis of flower buds and fruits in apple. Planta 210: 519-528.
38. Jeon J-S, Lee S, Jung K-H, Jun S-H, Jeong D-H, Lee J, Kim C, Jang S, Lee S-Y, Yang K, Nam J-M, An K, Han M-J, Sung R-J, Choi H-S, Yu J-W, Choi J-H, Cho S-Y, Cha S-S, An G. (2000) T-DNA insertional mutagenesis for functional genomics in rice. Plant J. 22: 561-570.
39. Kim C, Jeong D-H, An G. (2000) Molecular cloning and characterization of OsLRK1 encoding a putative receptor-like protein kinase from Oryza sativa. Plant Sci. 152: 17-26.
40. Jeong D-H, Sung S-K, An G. (1999) Molecular cloning and characterization of CONSTANS-like cDNA clones of the Fuji apple. J. Plant Biol. 42: 23-31.
41. Sung S-K, Jeong D-H, Nam J, Kim S-H, Kim S.-R, An G. (1998) Expressed sequence tags of fruits, peels, and carpels and analysis of mRNAs expression levels of the tagged cDNAs of fruits from the Fuji apple. Mol. Cells 8: 565-577.
■ 특허
- 전종성, 이상규, 심수현, 고희종, 김백기, 정동훈, 박소영 (2021) 벼의 폐화수정 유도를 위한 MicroRNA172b 유전자 및 이의 돌연변이에 의한 폐화수정 벼의 제조방법. 국내특허출원번호 10-2021-0084572
- 전종성, 김치열, 키우 티 수안 보, 얀 콩 뉴엔, 정동훈, 김성룡, 김주곤, 이상규 (2016) OsWRKY71 유전자의 발현이 증진된 저온 내성 형질전환 식물체. 출원번호: 10-2016-0048355
- An G, Lee S, Jeong D-H, Yoo JH, Ryu C-H, Jeon J-S, Kim S-R, Kim Y-O, Kim J, An S, (2014) Regulator for flowering time, transgenic plant transformed with the same, and method for regulating flowering time. US Patent No. 8785724B2
- An G, Jeong D-H, Kang H-G, An S, An K, S-O Moon. The method for preparing transformed monocotyledon with T-DNA tagging vector comprising an enhancer element for activation tagging and a reporter gene trapping and the transformants prepared by this method. Republic of Korea, Patent No. 0464677 (2004.12.22).